Citations

How to cite SpyKING CIRCUS

Note

If you are using SpyKING CIRCUS for your project, please cite us

  • Yger P., Spampinato, G.L.B, Esposito E., Lefebvre B., Deny S., Gardella C., Stimberg M., Jetter F., Zeck G. Picaud S., Duebel J., Marre O., A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo, eLife 2018;7:e34518

Selected publications refering to SpyKING CIRCUS

Here is a non exhaustive list of papers using SpyKING CIRCUS. Do not hesitate to send us a mail in order to add a paper

2018

  • Steinmetz N. A., Koch C., Harris K.D., Carandini M., Challenges and opportunities for large-scale electrophysiology with Neuropixels probes, Current Opinion in Neurobiology, Volume 50, 92-100

2017

  • Shan K. Q., Lubenov E. V., Siapas A. G., Model-based spike sorting with a mixture of drifting t-distributions, Journal of Neuroscience Methods, 288, 82-98
  • Deny S., Ferrari U., Mace E., Yger P., Caplette R., Picaud S., Tkacik G., Marre O., Multiplexed computations in retinal ganglion cells of a single type, Nature Communications 10.1038/s41467-017-02159-y
  • Chung, J. E., Magland, J. F., Barnett, A. H., Tolosa, V. M., Tooker, A. C., Lee, K. Y., … & Greengard, L. F. A Fully Automated Approach to Spike Sorting, Neuron, 95(6), 1381-1394
  • Mena, G. E., Grosberg, L. E., Madugula, S., Hottowy, P., Litke, A., Cunningham, J., … & Paninski, L. Electrical stimulus artifact cancellation and neural spike detection on large multi-electrode arrays, PLOS Computational Biology, 13(11), e1005842.
  • Mokri Y., Salazar R.F, Goodell2 B., Baker J., Gray C.M. and Yen S., Sorting Overlapping Spike Waveforms from Electrode and Tetrode Recordings, Front. Neuroinform.
  • Wilson C.D., Serrano G. O., Koulakov A. A., Rinberg D., A primacy code for odor identity, Nature Communication, 1477
  • Ferrari U., Gardella C., Marre O., Mora T., Closed-loop estimation of retinal network sensitivity reveals signature of efficient coding, bioRxiv, 096313
  • Denman, D. J., Siegle, J. H., Koch, C., Reid, R. C., & Blanche, T. J. Spatial organization of chromatic pathways in the mouse dorsal lateral geniculate nucleus, Journal of Neuroscience, 37(5), 1102-1116.

2016

  • Dimitriadis, G., Neto, J., & Kampff, A. T-SNE visualization of large-scale neural recordings, bioRxiv, 087395.
  • Yger P., Spampinato, G.L.B, Esposito E., Lefebvre B., Deny S., Gardella C., Stimberg M., Jetter F., Zeck G. Picaud S., Duebel J., Marre O., Fast and accurate spike sorting in vitro and in vivo for up to thousands of electrodes, bioRxiv, 67843