How to cite SpyKING CIRCUS


If you are using SpyKING CIRCUS for your project, please cite us

  • Yger P., Spampinato, G.L.B, Esposito E., Lefebvre B., Deny S., Gardella C., Stimberg M., Jetter F., Zeck G. Picaud S., Duebel J., Marre O., A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo, eLife 2018;7:e34518

Selected publications refering to SpyKING CIRCUS

Here is a non exhaustive list of papers using SpyKING CIRCUS. Do not hesitate to send us a mail in order update this list, the more the merrier


  • Radosevic M., Willumsen A., Petersen P. C., Linden H., Vestergaard M., Berg R. W. Decoupling of timescales reveals sparse convergent CPG network in the adult spinal cord, BiorXiv, 402917
  • Chaure F, Rey HG, Quian Quiroga R, A novel and fully automatic spike sorting implementation with variable number of features, J Neurophysiol. 10.1152/jn.00339.2018
  • Ravello C., Perrinet L. U, Escobar M.-J., Palacios A. G, Speed-Selectivity in Retinal Ganglion Cells is Modulated by the Complexity of the Visual Stimulus, BioRxiv, 350330
  • Wouters J, Kloosterman F., Bertrand A, Towards online spike sorting for high-density neural probes using discriminative template matching with suppression of interfering spikes, Journal of Neural Engineering, 1741-2552
  • Vilarchao M. E., Estebanez L., Shulz D. E., Férezou I., Supra-barrel Distribution of Directional Tuning for Global Motion in the Mouse Somatosensory Cortex, Cell Reports 22, 3534–3547
  • Barth A. M., Domonkos A., Fernandez-Ruiz A., Freund T.F., Varga V., Hippocampal Network Dynamics during Rearing Episodes, Cell Reports, 23(6):1706-1715
  • Steinmetz N. A., Koch C., Harris K.D., Carandini M., Challenges and opportunities for large-scale electrophysiology with Neuropixels probes, Current Opinion in Neurobiology, Volume 50, 92-100
  • Stern M., Bolding K. A. , Abbott L. F., Franks K. M, A transformation from temporal to ensemble coding in a model of piriform cortex, eLife, 10.7554/eLife.34831
  • Bolding K. A., Franks K. M. , Recurrent cortical circuits implement concentration-invariant odor coding, Science, 361(6407)
  • Escobar M.-J., Otero M., Reyes C., Herzog R., Araya J., Ibaceta C., Palacios A. G., Functional Asymmetries between Central and Peripheral Retinal Ganglion Cells in a Diurnal Rodent, BioRxiv, 277814


  • Lee J., Carlson D., Shokri H., Yao W., Goetz G., Hagen E., Batty E., Chichilnisky E.J., Einevoll G., Paninski L., YASS: Yet Another Spike Sorter, BioRxiv, 151928
  • Shan K. Q., Lubenov E. V., Siapas A. G., Model-based spike sorting with a mixture of drifting t-distributions, Journal of Neuroscience Methods, 288, 82-98
  • Deny S., Ferrari U., Mace E., Yger P., Caplette R., Picaud S., Tkacik G., Marre O., Multiplexed computations in retinal ganglion cells of a single type, Nature Communications 10.1038/s41467-017-02159-y
  • Chung, J. E., Magland, J. F., Barnett, A. H., Tolosa, V. M., Tooker, A. C., Lee, K. Y., … & Greengard, L. F. A Fully Automated Approach to Spike Sorting, Neuron, 95(6), 1381-1394
  • Mena, G. E., Grosberg, L. E., Madugula, S., Hottowy, P., Litke, A., Cunningham, J., … & Paninski, L. Electrical stimulus artifact cancellation and neural spike detection on large multi-electrode arrays, PLOS Computational Biology, 13(11), e1005842.
  • Mokri Y., Salazar R.F, Goodell2 B., Baker J., Gray C.M. and Yen S., Sorting Overlapping Spike Waveforms from Electrode and Tetrode Recordings, Front. Neuroinform.
  • Wilson C.D., Serrano G. O., Koulakov A. A., Rinberg D., A primacy code for odor identity, Nature Communication, 1477
  • Ferrari U., Gardella C., Marre O., Mora T., Closed-loop estimation of retinal network sensitivity reveals signature of efficient coding, eNeuro, ENEURO.0166-17.2017
  • Denman, D. J., Siegle, J. H., Koch, C., Reid, R. C., & Blanche, T. J. Spatial organization of chromatic pathways in the mouse dorsal lateral geniculate nucleus, Journal of Neuroscience, 37(5), 1102-1116.


  • Dimitriadis, G., Neto, J., & Kampff, A. T-SNE visualization of large-scale neural recordings, bioRxiv, 087395.
  • Yger P., Spampinato, G.L.B, Esposito E., Lefebvre B., Deny S., Gardella C., Stimberg M., Jetter F., Zeck G. Picaud S., Duebel J., Marre O., Fast and accurate spike sorting in vitro and in vivo for up to thousands of electrodes, bioRxiv, 67843